PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g13110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92563 Da    PI: 6.42
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g13110genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-191472357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  CA12g13110 14 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 72
                5679*****************************************************97 PP

2START170.98.5e-541583652204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+ + ++  g+++l +++l
  CA12g13110 158 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAngGTIELLYMQL 255
                 789*******************************************************.8888888888****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+    +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++ +s v +v+h++l++++++++lr+l++s+++ ++
  CA12g13110 256 YAPTTLAPpRDFWLLRYTTVTDDGSFVVCERSLRNTQNGPSmppVQNFVRAEILPSGYLIRPCEGSGSIVRIVDHMNLEAWSVPEVLRPLYESSAVLAQ 354
                 ***************************************9988899***************************************************** PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 kt++a+l++++
  CA12g13110 355 KTTMAALRQLR 365
                 *******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.807973IPR001356Homeobox domain
SMARTSM003892.3E-161177IPR001356Homeobox domain
SuperFamilySSF466895.56E-171275IPR009057Homeodomain-like
CDDcd000869.85E-171474No hitNo description
PfamPF000461.1E-161572IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-181672IPR009057Homeodomain-like
CDDcd146862.63E-566104No hitNo description
PROSITE profilePS5084826.662148363IPR002913START domain
CDDcd088753.47E-73152367No hitNo description
Gene3DG3DSA:3.30.530.204.4E-25157363IPR023393START-like domain
SuperFamilySSF559611.37E-36157365No hitNo description
SMARTSM002342.0E-39157367IPR002913START domain
PfamPF018523.4E-51158365IPR002913START domain
PfamPF086708.8E-49694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MSCKDGRSVE DNGKYVRYTP EQVEALERLY HECPKPSSMR RQQLIRECPI LSHIEPRQIK  60
VWFQNRRCRE KQRKESSRLQ GVNRKLSAMN KLLVEENDRL QKQVTQLVYE NGYFLKQTQT  120
TKLASKDSSC ESVVTSGQHH LTPQHPPRDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM  180
PGMKPGPDSI GIIAISHGCT GMAARACGLV GLDPTRVAEI LKDRPSWYRD CRAVEVLNML  240
PTANGGTIEL LYMQLYAPTT LAPPRDFWLL RYTTVTDDGS FVVCERSLRN TQNGPSMPPV  300
QNFVRAEILP SGYLIRPCEG SGSIVRIVDH MNLEAWSVPE VLRPLYESSA VLAQKTTMAA  360
LRQLRQLTLE FLQPNVTNWG RRPAALRALS KRLSRGFNEA LNGFSSEGWS MQDNDGIDDV  420
AILVNSSPDR RMGLNLSFSD GFTSISNGVL CAKASMLLQS VTPAVLLRFL REHRSEWVDN  480
NIDAYSAAAV KVGPCSLPGA RVANFGGQVI LPLAHTVEHE EASLLEVIKL EGVCHSPEDV  540
IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP  600
NRTLDLTSAL ETGPVGSEVA NDLKATDGTS KCIMTMAFQF AFESHMQENV ASMARKYVRS  660
FISSVQRVAL ALSPSHFGFL GGLRLPLGTP EAHTLARWIC QSYRCFLAVE LPKLSSEGSE  720
SILDNLWHHS DAIICCSAKA MPVFTFANQA GLDMLETTLV ALQDVSLEKI FDEHGRKNLC  780
SEFPQIMQQG FAFLQGGICL STMGRPVSYE KAVAWKVLNE EDTAHCISFM FVNWSFV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550961.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLM1CIB60.0M1CIB6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000680370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein